A complete, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data, bisulfite sequencing or single molecule direct sequencing
We suggest MOABS on Bioconda at https://anaconda.org/bioconda/moabs
Latest version of source code and mannual are available at https://github.com/sunnyisgalaxy/moabs
A hg38 reference genome contains lambda and virus genome: Link
LiBis is an integrated Python package for processing low input WGBS data such as cell-free DNA methylome and single-cell DNA methylome sequencing.
Latest version of source code and mannual are available at https://github.com/Dangertrip/LiBis
GsmPlot is a web service to automatically download, analyze and visualize epigenetics data (ChIP-Seq, ATAC-Seq, Bis-Seq), public from NCBI or private from you.
A package available in C++ and R library for exact numerical modeling of binomial proportions applicable to analysis of methylcytosine and hydroxymethycotine
MEPS: Methylation Pipeline and Service
A cloud computation solution for DNA methylation analysis to make it biologist friendly and as fast as coffee time
GenCat: Gene’s Comprehensive Annotation Tool
A New Gene Annotation tool using RNA-Seq data to discover New Gene with filtering of false positives, predicting coding potential and ORF, and integration with other knowledge.
RRBSMAP: Bisulfite Sequence Mapping Program
A short reads mapping software for bisulfite sequencing reads to study DNA cytosine methylation at single nucleotide resolution.